Thermodynamics Research Center / ThermoML | Journal of Chemical Thermodynamics

Thermodynamic contributions of peptide backbone unit from water to biocompatible ionic liquids at T = 298.15 K

Vasantha, T., Attri, P.[Pankaj], Venkatesu, P.[Pannuru], Devi, R. S. R.
J. Chem. Thermodyn. 2012, 45, 1, 122-136
ABSTRACT
To quantify the biomolecular interactions of protein functional groups with biocompatible ionic liquids (ILs), transfer free energies of model compounds from water to aqueous ILs solutions have been determined from the solubility measurements, as a function of ILs concentration at T = 298.15 K under atmospheric pressure. The aqueous systems investigated contain amino acids of zwitterionic glycine peptides: glycine (Gly), diglycine (Gly2), and cyclic glycylglycine (c(GG)) with ILs of diethylammonium acetate ([Et2NH][CH3COO], DEAA), triethylammonium acetate ([Et3NH][CH3COO], TEAA), and trimethylammonium acetate ([Me3NH][CH3COO], TMAA). It was found that the solubility of model compounds in aqueous IL solutions decreases with increasing IL concentration (salting-out effect). We observed positive values of transfer free energy for Gly, Gly2, and c(GG) from water to ILs, indicating that the interactions between ILs and protein surface are unfavourable, which leads to stabilization of the native structure of amino acids. Moreover, our experimental data is used to determine transfer free energies of the peptide backbone unit -CH2C=ONH-) from water to IL solutions. These results explicitly elucidate that all alkyl ammonium ILs acted as stabilizers for tested model compounds through the exclusion of ILs from surface of model compounds and also reflect the effect of alkyl chain on the stability of protein model compounds. To obtain the mechanism events of the ILs role in enhancing the stability of the model compounds structure, we further studied the UV-vis spectrum analysis.
Compounds
# Formula Name
1 C2H5NO2 2-aminoacetic acid
2 C4H7NO4 N-(carboxymethyl)glycine
3 C4H6N2O2 2,5-diketopiperazine
4 C6H15NO2 diethylammonium acetate
5 C8H19NO2 triethylammonium acetate
6 C5H13NO2 trimethylammonium acetate
7 H2O water
Datasets
The table above is generated from the ThermoML associated json file (link above). POMD and RXND refer to PureOrMixture and Reaction Datasets. The compound numbers are included in properties, variables, and phases, if specificied; the numbers refer to the table of compounds on the left.
Type Compound-# Property Variable Constraint Phase Method #Points
  • POMD
  • 1
  • 7
  • Mass density, kg/m3 ; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 1
  • Vibrating tube method
  • 1
  • POMD
  • 2
  • 7
  • Mass density, kg/m3 ; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 2
  • Vibrating tube method
  • 1
  • POMD
  • 3
  • 7
  • Mass density, kg/m3 ; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 3
  • Vibrating tube method
  • 1
  • POMD
  • 1
  • 7
  • 4
  • Mass ratio of solute to solvent - 1 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 4; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 1
  • density
  • 3
  • POMD
  • 1
  • 7
  • 4
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 4; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 1
  • Vibrating tube method
  • 3
  • POMD
  • 1
  • 5
  • 7
  • Mass ratio of solute to solvent - 1 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 5; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 1
  • density
  • 3
  • POMD
  • 1
  • 5
  • 7
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 5; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 1
  • Vibrating tube method
  • 3
  • POMD
  • 1
  • 6
  • 7
  • Mass ratio of solute to solvent - 1 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 6; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 1
  • density
  • 3
  • POMD
  • 1
  • 6
  • 7
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 6; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 1
  • Vibrating tube method
  • 3
  • POMD
  • 2
  • 7
  • 4
  • Mass ratio of solute to solvent - 2 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 4; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 2
  • density
  • 3
  • POMD
  • 2
  • 7
  • 4
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 4; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 2
  • Vibrating tube method
  • 3
  • POMD
  • 2
  • 5
  • 7
  • Mass ratio of solute to solvent - 2 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 5; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 2
  • density
  • 3
  • POMD
  • 2
  • 5
  • 7
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 5; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 2
  • Vibrating tube method
  • 3
  • POMD
  • 2
  • 6
  • 7
  • Mass ratio of solute to solvent - 2 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 6; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 2
  • density
  • 3
  • POMD
  • 2
  • 6
  • 7
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 6; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 2
  • Vibrating tube method
  • 3
  • POMD
  • 3
  • 7
  • 4
  • Mass ratio of solute to solvent - 3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 4; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 3
  • density
  • 3
  • POMD
  • 3
  • 7
  • 4
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 4; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 3
  • Vibrating tube method
  • 3
  • POMD
  • 3
  • 5
  • 7
  • Mass ratio of solute to solvent - 3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 5; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 3
  • density
  • 3
  • POMD
  • 3
  • 5
  • 7
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 5; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 3
  • Vibrating tube method
  • 3
  • POMD
  • 3
  • 6
  • 7
  • Mass ratio of solute to solvent - 3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 6; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 3
  • density
  • 3
  • POMD
  • 3
  • 6
  • 7
  • Mass density, kg/m3 ; Liquid
  • Solvent: Volume ratio of component to other component of binary solvent - 6; Liquid
  • Pressure, kPa; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Crystal - 3
  • Vibrating tube method
  • 3