Thermodynamics Research Center / ThermoML | Fluid Phase Equilibria

Thermodynamics of a model biological reaction: A comprehensive combined experimental and theoretical study

Emel'yanenko, V. N.[Vladimir N.], Yermalayeu, A. V.[Andrei V.], Voges, M.[Matthias], Held, C.[Christoph], Sadowski, G.[Gabriele], Verevkin, S. P.[Sergey P.]
Fluid Phase Equilib. 2016, 422, 99-110
ABSTRACT
In this work we applied experimental and theoretical thermodynamics to methyl ferulate hydrolysis, a model biological reaction in order to calculate the equilibrium constant and reaction enthalpy. In the first step, reaction data was collected. Temperature-dependent equilibrium concentrations of methyl ferulate hydrolysis have been measured. These were combined with activity coefficients predicted with electrolyte PC-SAFT in order to derive thermodynamic equilibriums constants K_a as a function of temperature. In a second step, thermochemical properties of the highly pure reaction participants methyl ferulate and ferulic acid were measured by complementary thermochemical methods including combustion and differential scanning calorimetry. Vapor pressures and sublimation enthalpies of these compounds were measured by transpiration and TGA methods over a broad temperature range. Thermodynamic data on methyl ferulate and ferulic acid available in the literature were evaluated and combined with our own experimental results. Further, the standard molar enthalpy of methyl ferulate hydrolysis reaction calculated according to the Hess' Law applied to the reaction participants was found to be in agreement with the experimental reaction enthalpy from the equilibrium study. In a final step, the gas-phase equilibrium constant of methyl ferulate hydrolysis at 298.15 K was calculated with the G3MP2 method. This value was adjusted to the liquid phase using the experimental vapor pressures of the reaction participants. As a result, the liquid phase K_a value calculated by quantum chemistry with additional data on the pure reaction participants was in good agreement with the experimental K_a reported in the literature for the aqueous phase. The thermodynamic procedure based on the quantum-chemical calculations is found to be a valuable option for assessment of thermodynamic properties of biologically relevant chemical reactions
Compounds
# Formula Name
1 CO2 carbon dioxide
2 H2O water
3 O2 oxygen
4 H2 hydrogen
5 C graphite
6 C10H10O4 4-hydroxy-3-methoxycinnamic acid
7 C11H12O4 methyl 3-(4-hydroxy-3-methoxyphenyl)-2-propenoate
Datasets
The table above is generated from the ThermoML associated json file (link above). POMD and RXND refer to PureOrMixture and Reaction Datasets. The compound numbers are included in properties, variables, and phases, if specificied; the numbers refer to the table of compounds on the left.
Type Compound-# Property Variable Constraint Phase Method #Points
  • POMD
  • 6
  • Normal melting temperature, K ; Crystal
  • Crystal
  • Liquid
  • Air at 1 atmosphere
  • DTA
  • 1
  • POMD
  • 6
  • Molar enthalpy of transition or fusion, kJ/mol ; Crystal
  • Crystal
  • Liquid
  • Air at 1 atmosphere
  • DSC
  • 1
  • POMD
  • 6
  • Molar enthalpy of vaporization or sublimation, kJ/mol ; Crystal
  • Temperature, K; Crystal
  • Crystal
  • Gas
  • TGA
  • 1
  • POMD
  • 7
  • Molar enthalpy of transition or fusion, kJ/mol ; Crystal
  • Crystal
  • Liquid
  • Air at 1 atmosphere
  • DSC
  • 1
  • POMD
  • 7
  • Molar enthalpy of vaporization or sublimation, kJ/mol ; Crystal
  • Temperature, K; Crystal
  • Crystal
  • Gas
  • Derived by Second law
  • 1
  • POMD
  • 7
  • Vapor or sublimation pressure, kPa ; Liquid
  • Temperature, K; Liquid
  • Liquid
  • Gas
  • Transpiration method
  • 10
  • RXND
  • 7
  • 1
  • 2
  • 3
  • Molar enthalpy of reaction, kJ/mol
  • Static bomb calorimetry
  • 1
  • RXND
  • 7
  • 1
  • 2
  • 3
  • Specific internal energy of reaction at constant volume, J/g
  • Static bomb calorimetry
  • 1
  • RXND
  • 6
  • 1
  • 2
  • 3
  • Molar enthalpy of reaction, kJ/mol
  • Static bomb calorimetry
  • 1
  • RXND
  • 6
  • 1
  • 2
  • 3
  • Specific internal energy of reaction at constant volume, J/g
  • Static bomb calorimetry
  • 1
  • RXND
  • 7
  • 4
  • 5
  • 3
  • Molar enthalpy of reaction, kJ/mol
  • Static bomb calorimetry
  • 1
  • RXND
  • 7
  • 4
  • 5
  • 3
  • Molar enthalpy of reaction, kJ/mol
  • Static bomb calorimetry
  • 1
  • RXND
  • 6
  • 4
  • 5
  • 3
  • Molar enthalpy of reaction, kJ/mol
  • Static bomb calorimetry
  • 1
  • RXND
  • 6
  • 4
  • 5
  • 3
  • Molar enthalpy of reaction, kJ/mol
  • Static bomb calorimetry
  • 1